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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
Assay category
75
DNA binding
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
118
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
January, 2019
4
June, 2019
2
August, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
74
bam
73
bed narrowPeak
73
bigWig
71
bigBed narrowPeak
68
fastq
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
75
Homo sapiens
Biosample type
65
cell line
28
tissue
11
in vitro differentiated cells
10
primary cell
Organ
54
liver
10
blood
10
bodily fluid
6
epithelium
3
brain
2
kidney
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
heart
1
pancreas
Project
75
AMP
Genome assembly (visualization)
72
hg19
67
GRCh38
Lab
74
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_title!
Capture-C
DNase-seq
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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