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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
22
ATAC-seq
DNase-seq
1
FAIRE-seq
Assay category
30
DNA binding
23
DNA accessibility
Target of assay
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
14
December, 2017
14
September, 2018
11
October, 2019
5
September, 2017
4
November, 2017
3
August, 2017
2
June, 2019
Available data
278
bam
265
bigWig
257
fastq
148
tsv
122
bed narrowPeak
80
zippedFastqFolder
53
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
6
hic
5
bed bed3+
5
bedpe bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
cool
2
hdf5
1
tar
Organism
53
Homo sapiens
Biosample type
39
primary cell
14
in vitro differentiated cells
Organ
353
liver
95
brain
83
pancreas
72
vasculature
70
blood vessel
64
heart
59
epithelium
54
blood
54
bodily fluid
48
limb
kidney
24
nerve
21
artery
19
connective tissue
14
musculature of body
12
spleen
11
vein
8
adipose tissue
2
eye
Project
53
AMP
Genome assembly (visualization)
53
hg19
52
GRCh38
Lab
53
AMP-T2D consortium
assay_title!
Capture-C
DNase-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
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in vitro differentiated cells
hepatocyte
14
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