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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
100
ChIP-seq
38
ATAC-seq
4
Hi-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
100
DNA binding
39
DNA accessibility
4
3D chromatin structure
Target of assay
69
histone
69
histone modification
36
narrow histone mark
32
broad histone mark
31
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
89
May, 2021
42
August, 2017
31
August, 2021
31
February, 2018
26
December, 2017
26
February, 2021
8
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
264
bam
254
bigWig
131
bed narrowPeak
127
tsv
118
fastq
bed bed3+
17
bigBed narrowPeak
17
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
272
Homo sapiens
Biosample type
1562
tissue
597
primary cell
527
cell line
272
in vitro differentiated cells
Organ
60
connective tissue
20
epithelium
18
embryo
14
liver
2
pancreas
1
heart
Project
272
AMP
Genome assembly (visualization)
272
hg19
246
GRCh38
4
hg18
Lab
262
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
9
inconsistent control read length
assay_title!
Capture-C
FAIRE-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
41
7
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
14
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