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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
34
DNA accessibility
24
Transcription
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
86
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
13
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
243
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
fastq
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
260
Homo sapiens
Biosample type
252
tissue
8
primary cell
Organ
579
connective tissue
462
pancreas
447
adipose tissue
382
heart
349
kidney
322
liver
260
brain
251
epithelium
223
vasculature
221
blood vessel
159
bone element
141
artery
117
limb
86
musculature of body
60
eye
43
nerve
20
lung
20
vein
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
260
AMP
Genome assembly (visualization)
202
GRCh38
142
hg19
Lab
260
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
Capture-C
Hi-C
files.file_type!
bed bedMethyl
fastq
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
11
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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