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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
21
total RNA-seq
8
ATAC-seq
Hi-C
1
GRO-seq
1
WGBS
Assay category
88
DNA binding
44
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
69
October, 2019
32
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
6
February, 2021
3
February, 2020
2
May, 2021
1
January, 2018
1
July, 2019
Available data
150
bam
120
bigWig
106
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
27
fastq
21
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
155
Homo sapiens
Biosample type
118
tissue
29
in vitro differentiated cells
8
cell line
Organ
935
pancreas
787
liver
681
connective tissue
514
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
155
AMP
Genome assembly (visualization)
125
GRCh38
125
hg19
1
hg18
Lab
155
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
Capture-C
Hi-C
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
GRO-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
distal epiphysis of femur
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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