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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
10
total RNA-seq
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
17
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
RNA binding protein
1
broad histone mark
Date released
30
August, 2021
2
March, 2019
Available data
13
bed narrowPeak
13
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
32
Homo sapiens
Biosample type
28
cell line
4
tissue
Organ
28
liver
4
pancreas
Project
32
AMP
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
AMP-T2D consortium
338
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
32
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_title!
Capture-C
STARR-seq
lab.title!
AMP-T2D consortium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
17
9
1
1
tissue
islet of Langerhans
1
2
1
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