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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
158
ChIP-seq
WGBS
31
DNase-seq
29
snATAC-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
248
DNA accessibility
158
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
15
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
460
bam
442
bigWig
376
fastq
212
tsv
168
bed narrowPeak
112
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
804
Homo sapiens
Biosample type
2701
tissue
804
primary cell
638
cell line
258
in vitro differentiated cells
10
stem cell
Organ
355
epithelium
296
pancreas
38
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
503
AMP
247
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
440
hg19
387
GRCh38
Lab
503
AMP-T2D consortium
247
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Capture-C
WGBS
audit.ERROR.category!
audit script error
month_released!
May, 2021
BIOSAMPLE
ASSAY
804 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
13
Langerhans cell
85
21
pancreatic beta cell
21
23
12
13
exocrine cell
39
pancreatic acinar cell
4
9
12
8
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