Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
73
ChIP-seq
17
ATAC-seq
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
463
Transcription
73
DNA binding
19
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
51
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
October, 2017
1
October, 2019
Available data
505
bam
480
bigWig
459
tsv
88
txt
40
fastq
20
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
642
Homo sapiens
Biosample type
639
tissue
3
primary cell
1
in vitro differentiated cells
Organ
888
pancreas
786
liver
675
connective tissue
484
adipose tissue
475
epithelium
385
heart
354
kidney
270
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
642
AMP
1
T1D
Genome assembly (visualization)
495
hg19
487
GRCh38
Lab
642
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
Capture-C
WGBS
month_released!
October, 2017
BIOSAMPLE
ASSAY
643 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
pCHi-C
small RNA-seq
DNase-seq
tissue
adipose tissue
382
2
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
1
12
1
1
+ See 16 more…
primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download