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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
134
DNA binding
94
Transcription
47
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
21
May, 2019
14
February, 2021
7
July, 2019
6
October, 2019
5
June, 2019
5
March, 2020
Available data
191
bed narrowPeak
155
bigWig
142
bam
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
bigBed broadPeak
8
bed bedMethyl
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
283
Homo sapiens
Biosample type
264
tissue
14
cell line
5
primary cell
Organ
536
liver
534
pancreas
363
epithelium
283
heart
229
brain
212
kidney
196
connective tissue
156
vasculature
155
blood vessel
97
bone element
89
adipose tissue
81
artery
78
limb
69
blood
69
bodily fluid
53
musculature of body
37
eye
36
nerve
23
embryo
22
spleen
20
lung
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
283
AMP
Genome assembly (visualization)
161
GRCh38
90
hg19
Lab
243
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
Capture-C
total RNA-seq
files.file_type!
bigBed bedMethyl
bigBed broadPeak
BIOSAMPLE
ASSAY
283 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
2
1
1
2
left cardiac atrium
40
18
coronary artery
5
36
heart right ventricle
13
17
1
1
right cardiac atrium
6
18
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
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