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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
55
total RNA-seq
47
WGBS
28
ChIP-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
72
DNA accessibility
55
Transcription
53
DNA methylation
28
DNA binding
8
3D chromatin structure
Target of assay
26
control
5
histone
5
histone modification
4
broad histone mark
3
nucleotide modification
1
narrow histone mark
Date released
80
May, 2022
52
February, 2023
16
May, 2021
16
September, 2020
12
August, 2017
12
October, 2019
8
July, 2019
6
February, 2021
6
November, 2020
3
March, 2020
3
November, 2019
3
October, 2022
2
June, 2019
2
November, 2017
1
August, 2021
1
December, 2019
1
May, 2019
Available data
80
zippedFastqFolder
73
fastq
29
bam
13
bed narrowPeak
10
tsv
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hdf5
1
bigBed narrowPeak
1
tagAlign
1
tar
Organism
223
Homo sapiens
Biosample type
181
primary cell
28
cell line
15
tissue
in vitro differentiated cells
Organ
308
pancreas
259
liver
224
epithelium
149
kidney
127
heart
93
bone element
75
connective tissue
69
brain
66
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
82
AMP
Genome assembly (visualization)
291
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
76
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
30
inconsistent ontology term
5
audit script error
assay_title!
Capture-C
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
224 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
Hi-C
MeRIP-seq
RRBS
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
endothelial cell of umbilical vein
7
2
1
pancreatic acinar cell
4
1
epithelial cell of proximal tubule
2
1
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cell line
EndoC_BH1
18
2
1
6
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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