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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
17
pCHi-C
16
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
7
total RNA-seq
1
DNAme array
Assay category
42
DNA binding
26
DNA accessibility
16
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
257
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
1
bam
1
tagAlign
Organism
101
Homo sapiens
Biosample type
43
in vitro differentiated cells
22
primary cell
21
tissue
16
cell line
Organ
19
lung
18
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
66
AMP
19
LungMap
17
T1D
Genome assembly (visualization)
hg19
276
GRCh38
Lab
60
Kyle Gaulton, UCSD
23
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
17
inconsistent ontology term
assay_title!
Capture-C
assembly!
hg19
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
+ See 10 more…
tissue
lung
10
9
pancreas
1
thymus
1
cell line
EndoC_BH1
16
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