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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
Assay category
229
DNA binding
Target of assay
227
histone
227
histone modification
142
narrow histone mark
85
broad histone mark
transcription factor
2
control
Date released
85
May, 2021
40
October, 2019
38
August, 2017
27
May, 2020
18
November, 2017
15
August, 2021
6
October, 2017
Available data
2389
bigWig
2376
bam
1344
tsv
1053
bed narrowPeak
561
fastq
488
bigBed narrowPeak
238
bed broadPeak
229
tagAlign
219
bed bed3+
202
bigBed broadPeak
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
19
hic
12
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
223
Homo sapiens
Biosample type
105
tissue
99
primary cell
13
in vitro differentiated cells
12
cell line
Organ
43
brain
42
liver
13
musculature of body
13
pancreas
4
epithelium
1
adipose tissue
1
connective tissue
1
pituitary gland
Project
145
AMP
84
T1D
Genome assembly (visualization)
237
GRCh38
229
hg19
Lab
145
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
assay_title!
Capture-C
organ_slims!
blood vessel
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
tissue
liver
27
skeletal muscle tissue
13
brain
6
islet of Langerhans
6
pancreas
6
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
12
pancreatic PP cell
1
cell line
HepG2
12
See all biosamples
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