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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
5
single cell RNA-seq
3
ChIP-seq
Capture-C
1
Hi-C
Assay category
38
Transcription
19
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
6
November, 2019
6
November, 2020
5
July, 2018
4
March, 2020
Available data
42
bam
41
bigWig
39
tsv
5
fastq
2
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
67
Homo sapiens
Biosample type
62
cell line
5
primary cell
Organ
84
bone element
73
epithelium
67
pancreas
21
kidney
11
connective tissue
4
embryo
4
heart
2
musculature of body
1
adipose tissue
1
brain
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
65
AMP
2
T1D
Genome assembly (visualization)
43
hg19
40
GRCh38
Lab
61
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
67
inconsistent ontology term
4
audit script error
assay_title!
Capture-C
month_released!
May, 2023
target.investigated_as!
histone
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ATAC-seq
MeRIP-seq
single cell RNA-seq
ChIP-seq
Hi-C
cell line
EndoC_BH1
33
19
6
3
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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