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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
136
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
122
May, 2021
43
August, 2017
33
August, 2021
31
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
248
bam
217
bigWig
131
tsv
104
fastq
95
bed narrowPeak
26
tagAlign
19
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
330
Homo sapiens
Biosample type
2310
tissue
943
primary cell
628
cell line
330
in vitro differentiated cells
9
stem cell
Organ
70
connective tissue
24
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
330
AMP
Genome assembly (visualization)
254
hg19
223
GRCh38
4
hg18
Lab
288
AMP-T2D consortium
37
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
Capture-C
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
330 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
42
5
8
1
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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