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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
Assay category
77
DNA binding
Target of assay
397
transcription factor
192
histone modification
191
histone
168
control
98
broad histone mark
92
narrow histone mark
82
recombinant protein
77
RNA binding protein
23
chromatin remodeller
4
other context
4
other post-translational modification
Date released
28
November, 2017
20
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
4
December, 2017
2
December, 2018
Available data
103
bigWig
102
bed narrowPeak
100
bam
90
bigBed narrowPeak
86
fastq
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
77
Homo sapiens
Biosample type
56
cell line
15
tissue
6
in vitro differentiated cells
Organ
50
liver
10
blood
10
bodily fluid
9
connective tissue
8
pancreas
5
adipose tissue
2
epithelium
Project
77
AMP
Genome assembly (visualization)
74
hg19
73
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
4
inconsistent control read length
inconsistent control run_type
assay_title!
Capture-C
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
cell line
HepG2
46
GM12878
10
tissue
body of pancreas
5
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
liver
1
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in vitro differentiated cells
adipocyte
4
hepatocyte
2
See all biosamples
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