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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
60
ChIP-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
89
Transcription
60
DNA binding
15
DNA methylation
1
DNA accessibility
Target of assay
histone
79
histone modification
45
broad histone mark
42
control
34
narrow histone mark
18
transcription factor
1
RNA binding protein
Date released
666
February, 2021
314
May, 2020
194
August, 2021
168
July, 2018
165
August, 2017
162
May, 2022
135
May, 2021
126
February, 2023
101
July, 2019
90
October, 2019
79
November, 2017
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
May, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
13
December, 2017
9
January, 2019
8
December, 2019
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
5
October, 2017
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
156
fastq
151
bam
127
bigWig
89
tsv
bed narrowPeak
14
bed bed3+
11
bigBed narrowPeak
9
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bed broadPeak
3
bigBed broadPeak
Organism
164
Homo sapiens
Biosample type
151
tissue
14
primary cell
in vitro differentiated cells
Organ
116
pancreas
24
adipose tissue
24
connective tissue
16
liver
12
epithelium
7
musculature of body
Project
165
AMP
Genome assembly (visualization)
113
hg19
110
GRCh38
Lab
165
AMP-T2D consortium
Audit category:
18
missing controlled_by
assay_title!
Capture-C
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
target.investigated_as!
histone
BIOSAMPLE
ASSAY
165 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
89
13
liver
11
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 3 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
1
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