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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
102
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
1
3D chromatin structure
Target of assay
162
histone modification
histone
89
broad histone mark
72
narrow histone mark
53
transcription factor
46
control
6
RNA binding protein
3
chromatin remodeller
Date released
689
February, 2021
318
November, 2017
314
May, 2020
269
August, 2021
200
May, 2022
199
June, 2019
189
February, 2023
182
August, 2017
168
July, 2018
148
May, 2021
110
October, 2019
108
July, 2019
88
November, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
46
November, 2019
46
October, 2018
44
December, 2017
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
191
fastq
185
bam
157
bigWig
89
tsv
47
bed narrowPeak
41
bigBed narrowPeak
14
bed bed3+
9
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bed broadPeak
3
bigBed broadPeak
Organism
216
Homo sapiens
Biosample type
168
tissue
in vitro differentiated cells
28
cell line
21
primary cell
Organ
122
pancreas
27
blood
27
bodily fluid
25
adipose tissue
25
connective tissue
23
liver
15
epithelium
7
musculature of body
7
spleen
Project
217
AMP
Genome assembly (visualization)
160
hg19
153
GRCh38
Lab
217
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
18
missing controlled_by
assay_title!
Capture-C
biosample_type!
in vitro differentiated cells
target.investigated_as!
histone
BIOSAMPLE
ASSAY
217 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
tissue
islet of Langerhans
14
89
1
1
liver
16
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 5 more…
cell line
GM12878
27
HepG2
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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