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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
51
ChIP-seq
50
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
single cell RNA-seq
Assay category
81
DNA accessibility
51
DNA binding
51
Transcription
Target of assay
31
transcription factor
13
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
657
February, 2021
400
November, 2017
341
May, 2020
314
August, 2017
271
August, 2021
271
October, 2019
246
May, 2021
198
June, 2019
137
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
74
October, 2018
51
December, 2017
50
March, 2020
47
September, 2023
40
May, 2024
40
November, 2019
40
September, 2020
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
January, 2018
2
December, 2019
2
June, 2018
1
August, 2022
1
October, 2022
Available data
90
fastq
89
bed narrowPeak
51
bam
38
bigWig
36
bigBed narrowPeak
14
tsv
5
bed bed3
4
txt
3
bed bed3+
Organism
188
Homo sapiens
Biosample type
129
tissue
51
primary cell
in vitro differentiated cells
5
cell line
3
stem cell
Organ
56
pancreas
epithelium
48
liver
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
126
AMP
39
HPAP
23
T1D
Genome assembly (visualization)
74
GRCh38
60
hg19
Lab
126
AMP-T2D consortium
39
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
Capture-C
biosample_type!
in vitro differentiated cells
organ_slims!
epithelium
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
single cell RNA-seq
tissue
liver
38
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
right lobe of liver
10
+ See 7 more…
primary cell
exocrine cell
39
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
3
2
stem cell
hESC
3
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