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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
34
DNA binding
26
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
histone
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
31
August, 2017
13
February, 2023
11
February, 2021
9
June, 2019
8
July, 2019
6
November, 2020
2
April, 2018
2
August, 2021
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
62
bam
56
bigWig
33
fastq
29
bed narrowPeak
21
tsv
19
bed bed3+
10
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
2
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
90
Homo sapiens
Biosample type
tissue
58
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
414
epithelium
397
liver
361
pancreas
90
connective tissue
86
vasculature
81
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
45
kidney
25
embryo
18
brain
7
vein
6
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
89
AMP
1
T1D
Genome assembly (visualization)
72
hg19
53
GRCh38
Lab
87
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
Capture-C
biosample_type!
tissue
target.investigated_as!
histone
histone modification
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
30
8
5
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
cardiac fibroblast
1
+ See 2 more…
primary cell
osteoblast
2
5
1
1
cardiac fibroblast
3
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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