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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
Assay category
345
DNA binding
Target of assay
345
transcription factor
89
recombinant protein
75
control
64
RNA binding protein
30
chromatin remodeller
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
August, 2021
7
October, 2019
1
November, 2019
Available data
349
bam
345
bigWig
341
bed narrowPeak
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
tagAlign
3
tar
Organism
345
Homo sapiens
Biosample type
345
cell line
94
tissue
45
in vitro differentiated cells
10
primary cell
Organ
286
liver
51
blood
51
bodily fluid
7
kidney
1
epithelium
1
pancreas
Project
345
AMP
Genome assembly (visualization)
336
hg19
304
GRCh38
Lab
345
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_title!
Capture-C
files.file_type!
tagAlign
month_released!
August, 2021
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
cell line
HepG2
286
GM12878
51
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
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