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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
312
ChIP-seq
86
RNA microarray
74
single cell RNA-seq
52
ATAC-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
11
RRBS
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1071
Transcription
312
DNA binding
75
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
August, 2021
120
July, 2018
90
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
32
February, 2023
31
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
19
April, 2020
19
November, 2019
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1772
bigWig
977
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1617
Homo sapiens
Biosample type
1619
tissue
788
primary cell
238
in vitro differentiated cells
227
cell line
8
stem cell
Organ
533
connective tissue
474
adipose tissue
378
pancreas
247
liver
150
bone element
82
kidney
73
brain
45
heart
30
limb
29
musculature of body
26
blood vessel
26
eye
26
vasculature
20
lung
16
nerve
11
spleen
9
artery
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1524
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
976
GRCh38
968
hg19
Lab
1475
AMP-T2D consortium
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
assay_title!
Capture-C
files.file_type!
bed narrowPeak
bedpe bed3+
month_released!
August, 2021
BIOSAMPLE
ASSAY
1619 results
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total RNA-seq
ChIP-seq
RNA microarray
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
Hi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
291
51
6
31
4
7
1
1
4
adipose tissue
382
1
2
3
1
liver
167
63
1
3
1
1
1
bone element
84
kidney
7
56
11
1
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