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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
10
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
6
histone
6
histone modification
4
broad histone mark
4
control
2
narrow histone mark
Date released
13
August, 2017
7
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
57
bigWig
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
31
Homo sapiens
Biosample type
31
tissue
5
primary cell
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
10
hg19
5
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
Capture-C
files.file_type!
bed narrowPeak
organ_slims!
blood
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
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