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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
79
DNA binding
11
DNA accessibility
4
Transcription
Target of assay
42
transcription factor
21
histone
21
histone modification
16
control
11
narrow histone mark
10
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
312
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
94
bam
94
fastq
72
bed narrowPeak
72
bigWig
50
bigBed narrowPeak
bed bed3+
Organism
94
Homo sapiens
Biosample type
63
tissue
31
in vitro differentiated cells
Organ
63
liver
19
epithelium
14
kidney
10
embryo
1
adipose tissue
1
connective tissue
Project
94
AMP
Genome assembly (visualization)
74
GRCh38
63
hg19
Lab
80
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
Capture-C
files.file_type!
bed bed3+
month_released!
July, 2018
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
tissue
liver
38
kidney
11
3
right lobe of liver
10
adipose tissue
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
6
Hepatic endoderm
4
Posterior foregut
2
definitive endodermal cell
2
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