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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
3
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
18
DNA binding
3
Transcription
2
DNA accessibility
Target of assay
18
control
Date released
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
39
bam
26
fastq
bigWig
15
tsv
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
25
Homo sapiens
Biosample type
25
tissue
1
in vitro differentiated cells
Organ
286
pancreas
215
kidney
203
epithelium
159
heart
130
liver
71
vasculature
70
blood vessel
64
brain
55
eye
47
connective tissue
46
artery
26
adipose tissue
25
limb
20
lung
15
musculature of body
14
blood
14
bodily fluid
12
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Capture-C
files.file_type!
bigWig
month_released!
August, 2017
February, 2021
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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