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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
DNase-seq
73
ChIP-seq
1
Hi-C
Assay category
154
DNA accessibility
73
DNA binding
1
3D chromatin structure
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
141
June, 2019
60
November, 2017
15
August, 2017
9
November, 2018
1
March, 2019
1
November, 2020
1
October, 2019
Available data
2961
bam
2777
bigWig
1574
bed narrowPeak
1437
tsv
1101
fastq
882
bigBed narrowPeak
391
tagAlign
264
bed broadPeak
227
bigBed broadPeak
214
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
228
Homo sapiens
Biosample type
141
tissue
59
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
limb
33
musculature of body
30
heart
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
8
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
228
AMP
Genome assembly (visualization)
211
GRCh38
211
hg19
Lab
227
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_title!
Capture-C
organ_slims!
epithelium
limb
BIOSAMPLE
ASSAY
228 results
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DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 34 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
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