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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
18
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
broad histone mark
3
transcription factor
Date released
12
December, 2017
10
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
Available data
32
bam
25
bigWig
23
fastq
14
tsv
10
bed narrowPeak
2
bed bed3+
Organism
33
Homo sapiens
Biosample type
25
in vitro differentiated cells
8
cell line
Organ
866
pancreas
744
liver
638
connective tissue
472
epithelium
471
adipose tissue
336
heart
336
kidney
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
33
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
Capture-C
month_released!
December, 2019
organ_slims!
bone marrow
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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