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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
26
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
35
DNA accessibility
26
DNA binding
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
174
histone
histone modification
114
narrow histone mark
60
broad histone mark
27
control
2
RNA binding protein
2
transcription factor
Date released
29
June, 2019
17
July, 2019
16
November, 2017
12
February, 2020
9
October, 2019
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
71
bam
51
bigWig
34
bed narrowPeak
34
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
26
tsv
17
tagAlign
6
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
91
Homo sapiens
Biosample type
77
tissue
14
primary cell
Organ
788
pancreas
688
liver
603
connective tissue
458
adipose tissue
429
epithelium
324
kidney
296
heart
165
vasculature
blood vessel
159
bone element
121
artery
95
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
18
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
46
GRCh38
43
hg19
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Capture-C
month_released!
October, 2017
organ_slims!
blood vessel
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
91 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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