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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
165
ChIP-seq
100
ATAC-seq
1
pCHi-C
Assay category
190
Transcription
165
DNA binding
100
DNA accessibility
Target of assay
119
histone
119
histone modification
61
narrow histone mark
58
broad histone mark
46
control
RNA binding protein
5
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
314
August, 2021
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
398
bam
352
bigWig
189
tsv
119
bed narrowPeak
92
bigBed narrowPeak
50
tagAlign
Organism
456
Homo sapiens
Biosample type
304
tissue
151
primary cell
1
cell line
Organ
194
liver
47
blood vessel
47
vasculature
28
brain
19
heart
7
limb
7
musculature of body
4
artery
4
epithelium
4
kidney
2
pancreas
Project
411
AMP
45
T1D
Genome assembly (visualization)
352
hg19
298
GRCh38
Lab
411
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
assay_title!
Capture-C
month_released!
October, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
456 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
50
ascending aorta
15
temporal lobe
15
thoracic aorta
15
angular gyrus
13
+ See 7 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
1
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