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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
ChIP-seq
185
ATAC-seq
116
single cell RNA-seq
110
DNase-seq
85
RNA microarray
27
WGBS
24
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1112
Transcription
320
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
537
February, 2021
143
May, 2020
120
July, 2018
108
August, 2017
101
August, 2021
95
February, 2023
95
June, 2019
73
July, 2019
66
May, 2022
47
October, 2019
40
May, 2021
40
November, 2019
37
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1114
bam
1086
bigWig
1063
tsv
256
bed narrowPeak
157
fastq
115
bigBed narrowPeak
110
bed broadPeak
109
bed bed3+
108
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
Organism
1595
Homo sapiens
Biosample type
1597
tissue
788
primary cell
196
in vitro differentiated cells
169
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1549
AMP
29
T1D
19
LungMap
Genome assembly (visualization)
1154
hg19
1124
GRCh38
Lab
1474
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
2
audit script error
assay_title!
ChIP-seq
assay_title!!
ChIP-seq
organ_slims!
kidney
ovary
BIOSAMPLE
ASSAY
1597 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
68
6
1
4
7
3
1
4
1
liver
167
20
1
2
3
1
1
1
1
bone element
84
bone tissue
58
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