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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
ChIP-seq
9
ATAC-seq
DNase-seq
4
single cell RNA-seq
3
small RNA-seq
2
WGBS
1
Hi-C
Assay category
474
Transcription
9
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Date released
450
February, 2021
17
July, 2019
4
November, 2020
3
August, 2017
3
October, 2019
2
April, 2018
2
August, 2021
2
July, 2018
1
January, 2018
1
May, 2021
1
October, 2017
Available data
486
bigWig
482
bam
478
tsv
9
fastq
8
bed bed3+
8
bed narrowPeak
6
bed bed3
4
bed bedgraph
4
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
486
Homo sapiens
Biosample type
460
tissue
17
primary cell
9
in vitro differentiated cells
Organ
486
connective tissue
454
pancreas
404
adipose tissue
185
liver
183
epithelium
80
heart
65
blood vessel
65
vasculature
58
bone element
56
artery
18
brain
15
embryo
13
kidney
8
musculature of body
7
limb
5
nerve
3
spleen
1
blood
1
bodily fluid
1
pericardium
1
vein
Project
486
AMP
Genome assembly (visualization)
484
hg19
479
GRCh38
Lab
484
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
assay_title!
ChIP-seq
DNase-seq
organ_slims!
skeleton
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue
381
2
2
bone tissue
58
subcutaneous adipose tissue
6
1
1
omental fat pad
4
1
1
visceral abdominal adipose tissue
3
primary cell
osteoblast
5
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
brain pericyte
1
cardiac atrium fibroblast
1
+ See 3 more…
in vitro differentiated cells
adipocyte
4
3
cardiac fibroblast
1
osteoblast
1
See all biosamples
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