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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
ChIP-seq
161
ATAC-seq
135
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
FAIRE-seq
Assay category
384
Transcription
227
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
88
February, 2023
85
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
40
September, 2020
31
July, 2019
24
June, 2019
9
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
366
bam
365
bigWig
315
fastq
270
tsv
zippedFastqFolder
68
bed narrowPeak
51
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
655
Homo sapiens
Biosample type
1866
tissue
655
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
233
epithelium
196
pancreas
27
connective tissue
21
kidney
13
vasculature
12
brain
10
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
4
musculature of body
4
vein
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
363
AMP
171
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
380
hg19
329
GRCh38
Lab
361
AMP-T2D consortium
171
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
assay_title!
ChIP-seq
FAIRE-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
655 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
13
12
1
6
monocyte
54
15
1
1
Langerhans cell
33
27
pancreatic beta cell
21
10
12
1
exocrine cell
39
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