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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
34
DNase-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
38
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
17
July, 2019
12
February, 2020
5
October, 2019
3
March, 2020
2
November, 2018
1
February, 2023
1
October, 2017
Available data
51
bigWig
48
bam
37
bed bed3+
34
bed broadPeak
34
bed narrowPeak
34
bigBed broadPeak
34
bigBed narrowPeak
26
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
Organism
71
Homo sapiens
Biosample type
55
tissue
16
primary cell
Organ
722
pancreas
531
connective tissue
418
adipose tissue
394
epithelium
299
kidney
259
heart
226
liver
159
bone element
133
vasculature
130
blood vessel
107
artery
67
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
48
GRCh38
44
hg19
Lab
71
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ChIP-seq
FAIRE-seq
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
71 results
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DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
1
frontal cortex
2
2
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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