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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
193
total RNA-seq
35
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
197
Transcription
41
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
11
February, 2021
10
July, 2019
8
February, 2023
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
190
bigWig
179
bam
174
tsv
36
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed bed3
5
bed broadPeak
5
bigBed broadPeak
4
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
255
Homo sapiens
Biosample type
222
tissue
23
cell line
10
primary cell
Organ
726
pancreas
531
connective tissue
418
adipose tissue
394
epithelium
301
kidney
259
heart
239
liver
159
bone element
133
vasculature
130
blood vessel
107
artery
67
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
255
AMP
Genome assembly (visualization)
208
hg19
179
GRCh38
Lab
202
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
FAIRE-seq
BIOSAMPLE
ASSAY
255 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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