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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
ChIP-seq
82
single cell RNA-seq
60
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
283
Transcription
109
DNA accessibility
41
DNA methylation
Date released
134
May, 2022
99
February, 2023
68
May, 2021
59
September, 2020
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
4
March, 2020
4
March, 2023
Available data
153
zippedFastqFolder
124
fastq
108
bigWig
98
bam
98
tsv
Organism
450
Homo sapiens
Biosample type
396
primary cell
48
tissue
9
cell line
2
stem cell
Organ
173
pancreas
145
epithelium
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
276
HPAP
156
T1D
19
LungMap
4
community
Genome assembly (visualization)
108
GRCh38
98
hg19
Lab
276
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
assay_title!
ChIP-seq
Hi-C
award.project!
AMP
month_released!
February, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
455 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
29
25
Langerhans cell
73
21
monocyte
53
1
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
7
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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