Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1000
total RNA-seq
ChIP-seq
254
ATAC-seq
178
DNase-seq
133
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1133
Transcription
462
DNA accessibility
15
DNA methylation
12
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
103
August, 2017
95
February, 2023
July, 2019
66
May, 2022
47
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1121
bam
1094
bigWig
1029
tsv
382
bed narrowPeak
182
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
txt
154
fastq
64
xls
11
hic
10
bedpe bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
Organism
1739
Homo sapiens
Biosample type
1741
tissue
777
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
463
connective tissue
405
adipose tissue
382
pancreas
221
kidney
197
liver
170
heart
158
bone element
54
eye
53
blood vessel
53
vasculature
51
limb
45
brain
44
artery
42
musculature of body
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1693
AMP
29
T1D
19
LungMap
Genome assembly (visualization)
1208
GRCh38
1163
hg19
Lab
1476
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_title!
ChIP-seq
RRBS
lab.title!
KPMP
month_released!
July, 2019
BIOSAMPLE
ASSAY
1741 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
3
islet of Langerhans
292
68
1
6
7
4
3
4
1
liver
165
20
2
1
1
3
1
kidney
49
75
13
17
6
1
bone element
84
+ See 97 more…
See all biosamples
Download