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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
4
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Date released
20
May, 2022
13
August, 2021
4
August, 2017
3
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
July, 2019
1
May, 2020
1
October, 2019
Available data
bigWig
174
tsv
171
bam
28
bed narrowPeak
12
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
hdf5
1
vcf
Organism
47
Homo sapiens
Biosample type
29
tissue
17
cell line
1
primary cell
Organ
264
pancreas
206
kidney
189
epithelium
147
heart
101
bone element
57
blood vessel
57
vasculature
51
eye
47
artery
47
liver
35
connective tissue
20
lung
16
brain
16
skeleton
13
limb
12
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
20
Karen Mohlke, UNC
14
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
RRBS
files.file_type!
bigWig
tar
BIOSAMPLE
ASSAY
47 results
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total RNA-seq
WGBS
Hi-C
pCHi-C
ATAC-seq
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
3
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
2
2
1
2
1
primary cell
Liver fetal (hepatocyte)
1
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