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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
917
total RNA-seq
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1113
Transcription
465
DNA accessibility
16
3D chromatin structure
6
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
August, 2017
95
February, 2023
66
May, 2022
65
July, 2019
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
February, 2020
19
April, 2020
15
May, 2023
10
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1075
bam
1048
bigWig
962
tsv
385
bed narrowPeak
180
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
51
fastq
11
hic
10
bedpe bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
Organism
1717
Homo sapiens
Biosample type
1719
tissue
756
primary cell
195
in vitro differentiated cells
177
cell line
7
stem cell
Organ
464
connective tissue
406
adipose tissue
292
pancreas
272
kidney
198
liver
179
heart
158
bone element
55
blood vessel
55
vasculature
53
eye
52
limb
46
musculature of body
44
brain
43
artery
20
lung
18
ureter
16
skeleton
15
epithelium
7
nerve
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1624
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1161
GRCh38
1130
hg19
Lab
1407
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
ChIP-seq
WGBS
month_released!
August, 2017
February, 2020
BIOSAMPLE
ASSAY
1719 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
68
6
7
4
3
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
1
1
1
bone element
84
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