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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
143
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
2
February, 2021
2
June, 2019
2
March, 2020
2
October, 2019
December, 2018
1
February, 2020
Available data
190
bigWig
172
tsv
171
bam
28
bed narrowPeak
12
fastq
6
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
235
Homo sapiens
Biosample type
205
tissue
20
cell line
10
primary cell
Organ
727
pancreas
526
connective tissue
416
adipose tissue
395
epithelium
300
kidney
256
heart
235
liver
158
bone element
133
vasculature
130
blood vessel
107
artery
66
brain
56
limb
56
musculature of body
52
eye
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
235
AMP
Genome assembly (visualization)
195
hg19
171
GRCh38
Lab
182
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
pCHi-C
month_released!
December, 2018
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
right lobe of liver
3
1
2
1
2
cell line
HepG2
14
1
1
1
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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