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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
75
ATAC-seq
73
single cell RNA-seq
60
total RNA-seq
ChIP-seq
16
snATAC-seq
4
RRBS
pCHi-C
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
173
DNA accessibility
134
Transcription
4
DNA methylation
1
3D chromatin structure
Date released
130
August, 2021
78
June, 2019
47
September, 2023
19
April, 2020
14
May, 2023
11
July, 2019
9
October, 2019
8
February, 2021
3
December, 2019
Available data
144
bed narrowPeak
92
bam
92
bigWig
80
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
22
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
318
Homo sapiens
Biosample type
291
tissue
21
primary cell
7
cell line
Organ
727
pancreas
526
connective tissue
416
adipose tissue
395
epithelium
300
kidney
256
heart
236
liver
158
bone element
133
vasculature
130
blood vessel
107
artery
66
brain
56
limb
56
musculature of body
52
eye
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
253
AMP
47
KPMP
19
LungMap
Genome assembly (visualization)
166
GRCh38
90
hg19
Lab
142
Katalin Susztak, Upenn
109
AMP-T2D consortium
47
KPMP
19
Xin Sun, UCSD
2
Bing Ren, UCSD
Audit category:
7
audit script error
5
inconsistent ontology term
assay_title!
ChIP-seq
pCHi-C
BIOSAMPLE
ASSAY
319 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
6
1
1
1
lung
9
10
renal cortex interstitium
11
renal pelvis
10
right kidney
10
+ See 11 more…
primary cell
kidney tubule cell
3
1
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
cell line
HEK293T
2
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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