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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
61
total RNA-seq
46
ATAC-seq
15
single cell RNA-seq
11
DNase-seq
10
snATAC-seq
5
Hi-C
2
WGBS
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
76
Transcription
68
DNA accessibility
5
3D chromatin structure
3
DNA methylation
Date released
60
February, 2021
35
February, 2023
19
April, 2020
12
July, 2019
7
June, 2019
7
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
Available data
83
bam
76
bigWig
67
tsv
58
bed narrowPeak
13
bed bed3+
12
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
151
Homo sapiens
Biosample type
78
tissue
60
cell line
14
primary cell
Organ
727
pancreas
526
connective tissue
416
adipose tissue
395
epithelium
300
kidney
256
heart
236
liver
158
bone element
133
vasculature
130
blood vessel
107
artery
66
brain
56
limb
56
musculature of body
52
eye
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
133
AMP
19
LungMap
Genome assembly (visualization)
116
GRCh38
86
hg19
Lab
133
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ChIP-seq
pCHi-C
BIOSAMPLE
ASSAY
152 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
Hi-C
WGBS
FAIRE-seq
RRBS
tissue
coronary artery
1
36
2
lung
9
10
aorta
1
4
1
2
tibial artery
1
1
2
ascending aorta
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
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