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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
5
3D chromatin structure
3
Transcription
1
DNA accessibility
1
DNA methylation
Date released
3
February, 2020
3
July, 2019
3
March, 2020
2
October, 2019
Available data
4
tsv
3
bigWig
3
hic
2
bam
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
1
tar
Organism
11
Homo sapiens
Biosample type
6
tissue
5
primary cell
Organ
250
pancreas
198
epithelium
93
bone element
72
kidney
67
liver
52
eye
40
connective tissue
22
brain
16
musculature of body
13
heart
12
adipose tissue
12
vasculature
11
blood vessel
11
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
3
vein
2
artery
2
intestine
2
thymus
1
adrenal gland
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
11
AMP
Genome assembly (visualization)
GRCh38
83
hg19
Lab
11
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ChIP-seq
single cell RNA-seq
assembly!
GRCh38
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
11 results
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Hi-C
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
aorta
1
1
1
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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