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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
ChIP-seq
260
ATAC-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1047
Transcription
294
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
539
February, 2021
143
May, 2020
123
August, 2021
120
July, 2018
108
August, 2017
94
February, 2023
77
July, 2019
65
May, 2022
43
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
12
May, 2023
10
April, 2020
8
January, 2021
8
October, 2017
7
November, 2018
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1179
bam
1151
bigWig
967
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
bigBed broadPeak
151
fastq
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1512
Homo sapiens
Biosample type
1514
tissue
592
primary cell
193
in vitro differentiated cells
177
cell line
7
stem cell
Organ
471
connective tissue
413
adipose tissue
376
pancreas
202
liver
158
bone element
140
kidney
70
heart
51
eye
49
blood vessel
49
vasculature
39
artery
29
brain
20
limb
20
musculature of body
16
skeleton
15
epithelium
11
lung
6
nerve
4
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1475
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
1087
GRCh38
1060
hg19
Lab
1269
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
4
audit script error
assay_title!
ChIP-seq
single cell RNA-seq
files.file_type!
bigBed broadPeak
month_released!
October, 2018
BIOSAMPLE
ASSAY
1514 results
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total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
68
7
4
3
1
1
4
1
liver
167
20
3
1
1
1
1
kidney
49
75
6
1
1
1
bone element
84
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