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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
142
DNase-seq
87
RNA microarray
28
snATAC-seq
26
WGBS
25
pCHi-C
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1204
Transcription
426
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
539
February, 2021
229
August, 2021
143
May, 2020
131
June, 2019
120
July, 2018
108
August, 2017
95
February, 2023
66
May, 2022
56
July, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
37
October, 2019
22
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1120
bam
1098
bigWig
1053
tsv
345
bed narrowPeak
157
fastq
157
txt
148
bigBed narrowPeak
142
bed broadPeak
141
bed bed3+
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1796
Homo sapiens
Biosample type
1798
tissue
807
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
471
connective tissue
413
adipose tissue
386
pancreas
271
kidney
203
liver
189
heart
158
bone element
60
blood vessel
60
vasculature
limb
54
eye
52
brain
52
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1703
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1204
GRCh38
1162
hg19
Lab
1486
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
ChIP-seq
small RNA-seq
whole genome sequencing assay
organ_slims!
limb
BIOSAMPLE
ASSAY
1798 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
68
6
1
7
4
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
3
1
1
1
bone element
84
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