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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
35
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
37
Transcription
22
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
February, 2021
26
August, 2021
20
May, 2021
10
March, 2020
7
October, 2019
6
February, 2023
6
November, 2020
5
January, 2019
3
November, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
41
tsv
33
bigWig
30
bam
7
fastq
3
bed narrowPeak
2
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
86
Homo sapiens
Biosample type
1297
tissue
732
primary cell
170
in vitro differentiated cells
90
cell line
7
stem cell
Organ
38
epithelium
38
pancreas
21
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
81
AMP
7
T1D
2
community
Genome assembly (visualization)
35
hg19
31
GRCh38
Lab
61
AMP-T2D consortium
16
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
41
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
snATAC-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
90 results
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Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
STARR-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
7
19
6
1
3
2
2
1
HepG2
14
2
1
2
1
1
H1-hESC
8
EndoC-BH1
1
1
HEK293T
2
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