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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
ChIP-seq
20
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
92
Transcription
27
DNA methylation
22
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
680
February, 2021
291
May, 2020
270
August, 2021
234
May, 2021
203
February, 2023
187
June, 2019
178
May, 2022
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
18
November, 2018
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
9
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
December, 2018
Available data
125
bigWig
122
bam
91
tsv
41
fastq
23
bed bedMethyl
23
bigBed bedMethyl
21
bed narrowPeak
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
149
Homo sapiens
Biosample type
77
tissue
72
primary cell
Organ
53
epithelium
46
pancreas
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
149
AMP
Genome assembly (visualization)
131
hg19
119
GRCh38
Lab
149
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
snATAC-seq
BIOSAMPLE
ASSAY
149 results
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total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
pancreatic beta cell
10
4
pancreatic alpha cell
10
3
pancreatic ductal cell
4
4
pancreatic acinar cell
2
3
cerebellar granule cell
2
+ See 25 more…
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