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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
66
DNA accessibility
1
3D chromatin structure
Target of assay
3
control
Date released
65
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
40
September, 2018
24
June, 2019
18
July, 2019
6
November, 2020
6
October, 2019
5
December, 2019
5
September, 2017
3
August, 2017
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
March, 2023
Available data
318
bam
302
bigWig
252
tsv
142
fastq
66
bed narrowPeak
49
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
1
bed bed3
1
hic
Organism
319
Homo sapiens
Biosample type
1269
tissue
319
primary cell
145
in vitro differentiated cells
118
cell line
Organ
149
epithelium
124
pancreas
23
connective tissue
16
kidney
8
brain
8
liver
8
vasculature
7
heart
6
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
vein
1
eye
1
pericardium
Project
222
AMP
96
T1D
1
ITG
Genome assembly (visualization)
378
hg19
319
GRCh38
Lab
222
AMP-T2D consortium
96
Kyle Gaulton, UCSD
Klaus Kaestner, Upenn
1
ITG
Audit category:
16
inconsistent ontology term
assay_title!
ChIP-seq
snDrop-seq
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
319 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
53
13
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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