Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
ChIP-seq
16
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
5
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
1
DNAme array
Assay category
77
DNA accessibility
11
DNA methylation
7
3D chromatin structure
7
Transcription
Date released
57
May, 2020
20
May, 2021
13
July, 2019
12
February, 2023
8
January, 2021
3
October, 2019
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
bam
356
bigWig
264
tsv
146
fastq
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
118
Homo sapiens
Biosample type
682
tissue
118
primary cell
61
cell line
51
in vitro differentiated cells
7
stem cell
Organ
12
epithelium
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
93
AMP
24
T1D
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
Klaus Kaestner, Upenn
91
AMP-T2D consortium
26
Kyle Gaulton, UCSD
1
ITG
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
snDrop-seq
files.file_type!
bam
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
118 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
total RNA-seq
DNase-seq
single cell RNA-seq
DNAme array
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
1
2
+ See 35 more…
See all biosamples
Download