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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
55
total RNA-seq
47
WGBS
ChIP-seq
6
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
71
DNA accessibility
55
Transcription
53
DNA methylation
6
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
16
May, 2021
16
September, 2020
6
February, 2021
6
July, 2019
6
November, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
December, 2019
1
March, 2020
Available data
bigWig
188
bam
185
fastq
156
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
194
Homo sapiens
Biosample type
153
primary cell
27
cell line
15
tissue
Organ
266
pancreas
207
kidney
195
epithelium
149
heart
101
bone element
58
vasculature
57
blood vessel
52
eye
49
liver
47
artery
36
connective tissue
20
lung
18
brain
16
musculature of body
16
skeleton
13
limb
12
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
HPAP
53
AMP
Genome assembly (visualization)
26
hg19
2
GRCh38
Lab
142
Klaus Kaestner, Upenn
47
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
assay_title!
ChIP-seq
snDrop-seq
files.file_type!
bigWig
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
195 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
Liver fetal (hepatocyte)
1
+ See 8 more…
cell line
EndoC_BH1
17
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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