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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
48
single cell RNA-seq
32
pCHi-C
10
Hi-C
4
ATAC-seq
ChIP-seq
Assay category
183
Transcription
10
3D chromatin structure
4
DNA accessibility
Date released
704
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
209
tsv
181
bigWig
177
bam
50
fastq
12
bedpe bed3+
10
hic
2
ibed
Organism
229
Homo sapiens
Biosample type
158
tissue
49
primary cell
10
cell line
8
in vitro differentiated cells
4
stem cell
Organ
168
pancreas
38
epithelium
7
heart
5
musculature of body
4
blood vessel
4
connective tissue
4
vasculature
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
225
AMP
4
T1D
Genome assembly (visualization)
193
hg19
177
GRCh38
Lab
229
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
assay_title!
ChIP-seq
snDrop-seq
BIOSAMPLE
ASSAY
229 results
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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
ATAC-seq
tissue
islet of Langerhans
122
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 11 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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