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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1137
total RNA-seq
281
ATAC-seq
180
single cell RNA-seq
144
DNase-seq
87
RNA microarray
31
pCHi-C
28
snATAC-seq
27
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
1335
Transcription
457
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
627
February, 2021
254
August, 2021
144
May, 2020
131
June, 2019
120
July, 2018
108
August, 2017
101
February, 2023
72
July, 2019
66
May, 2022
60
May, 2021
48
March, 2020
47
September, 2023
44
October, 2019
43
November, 2019
22
February, 2020
19
April, 2020
17
November, 2018
15
May, 2023
10
November, 2020
8
January, 2021
8
October, 2017
6
April, 2018
5
January, 2019
5
March, 2019
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
1
December, 2018
1
October, 2022
Available data
1253
bam
1225
bigWig
1188
tsv
357
bed narrowPeak
164
fastq
158
txt
150
bigBed narrowPeak
144
bed bed3+
143
bed broadPeak
141
bigBed broadPeak
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
1
bedpe
1
hdf5
Organism
1985
Homo sapiens
Biosample type
1814
tissue
809
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
473
connective tissue
452
pancreas
415
adipose tissue
281
kidney
250
heart
228
liver
158
bone element
120
blood vessel
120
vasculature
105
artery
79
epithelium
56
brain
limb
54
eye
53
musculature of body
20
lung
18
ureter
16
skeleton
8
embryo
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1887
AMP
47
KPMP
36
T1D
19
LungMap
2
community
Genome assembly (visualization)
1338
GRCh38
1301
hg19
Lab
1651
AMP-T2D consortium
142
Katalin Susztak, Upenn
57
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
155
inconsistent ontology term
9
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
whole genome sequencing assay
organ_slims!
limb
BIOSAMPLE
ASSAY
1991 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
...and 2 more
tissue
adipose tissue
382
3
1
3
islet of Langerhans
292
68
6
1
4
7
3
1
4
1
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
1
3
1
1
1
bone element
84
+ See 91 more…
cell line
EndoC_BH1
33
19
1
6
3
2
2
1
smooth muscle cell of the coronary artery
52
8
HepG2
14
1
2
1
2
2
H1-hESC
8
EndoC-BH1
+ See 13 more…
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